PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000263.1_g00019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 229aa    MW: 25261.4 Da    PI: 6.8615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000263.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000133153123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C++ Fs++  L  H++ H
  Itr_sc000263.1_g00019.1 31 FSCNFCKREFSTSQALGGHQNAH 53
                             89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.05E-72758No hitNo description
Gene3DG3DSA:3.30.160.609.0E-52857IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5313158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTTSSPPPSN SSNNNEGESA ERRDFESERV FSCNFCKREF STSQALGGHQ NAHKQERALA  60
KRRQGLLDTV APYVGPHYHP YYHPYSAFSS HLPFYNSFGN RSLGVMPNYS SAIHRLPSSY  120
HHPSFLAENS NYSRLGGEKW SPRSLLTRPE SIQGNNNSSA FATTGFVANS FKLEINNKGQ  180
IGSGIKVDDN HTSADDSKNE GKNNALLGDD EDKGQDQEDA SGIDLSLKL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.13e-18zinc-finger protein 1